phlower.pl.plot_trajs_embedding
- phlower.pl.plot_trajs_embedding(adata, embedding='trajs_dm', clusters='trajs_clusters', node_size=1, label=True, labelsize=15, labelstyle='text', show_legend=True, markerscale=10, ax=None, **args)
Plot trjactories edges embeddings in umap or original t-map space
Parameters
- adata: AnnData
an Annodata object
- embedding: str
key of the embedding in adata.uns, indicate edges embedding, default is ‘trajs_dm’
- clusters: str
key of the clusters in adata.uns, default is ‘trajs_clusters’
- node_size: float
node size, default is 1
- label: bool
whether to show labels, default is True
- labelsize: float
label size, default is 15
- labelstyle: str
label style, default is ‘text’
- show_legend: bool
whether to show legend, default is True
- markerscale: float
marker scale, default is 10
- ax: matplotlib axis
axis to plot, default is None