phlower.pl.plot_fate_tree_embedding
- phlower.pl.plot_fate_tree_embedding(adata: AnnData, graph_name=None, layout_name=None, fate_tree: str = 'fate_tree', bg_node_size=1, bg_node_color='grey', node_size=30, alpha=0.8, label_attr=None, with_labels=False, ax=None, **args)
Plot the fate tree embedding.
Parameters
- adata: AnnData
an Annodata object
- graph_name: str
key of the graph in adata.uns, default is None
- layout_name: str
key of the layout in adata.obsm, default is None
- fate_tree: str
key of the fate tree in adata.uns, default is ‘fate_tree’
- bg_node_size: float
background node size, default is 1
- bg_node_color: str
background node color, default is ‘grey’
- node_size: float
node size, default is 30
- alpha: float
alpha, default is 0.8
- label_attr: str
label attribute, default is None
- with_labels: bool
whether to show labels, default is False