phlower.pl.plot_fate_tree

phlower.pl.plot_fate_tree(adata: AnnData, fate_tree: str = 'fate_tree', layout_prog='twopi', with_labels=True, ax=None, **args)

re-calcuate layout of a tree and plot

Parameters

adata: AnnData

an Annodata object

fate_tree: str

key of the fate tree in adata.uns, default is ‘fate_tree’

layout_prog: str

layout algorithm, can be: dot, twopi, fdp, sfdp, circo

with_labels: bool

whether to show labels, default is True

ax: matplotlib axis

axis to plot, default is None