phlower.pl.persisitence_birth_death

phlower.pl.persisitence_birth_death(adata: AnnData, include_holes: bool = True, persistence: str = 'persistence', min_persistence: float = 0.01, show_threshold: bool = True, show_legend: bool = True, manual_threshold: List[float] | None = None, ax=None, **args)

Plot the persistence birth death diagram

Parameters

adata: AnnData

an Annodata object

persistence: str

name in adata.uns