phlower

Getting started

  • About PHLOWER
  • Installation
  • Tutorial

API Reference

  • API

datasets

  • Datasets

downstream

  • Regulators
phlower
  • Welcome to PHLOWER’s documentation!
  • View page source

Welcome to PHLOWER’s documentation!

_images/phlower_logo_white_bg.png

PHLOWER is a Python library for single cell trajectory inference using Hodge Laplacian Decomposition.

Getting started

  • About PHLOWER
    • Incidence matrix
    • Hodge Laplacian
    • Trajectory sampling
    • Cumulative trajectory embedding and tree inference
    • References
  • Installation
    • system dependences
    • install from pypi
    • install newest phlower version
    • Run
  • Tutorial
    • Fibroblast to neuron
    • Kidney
    • Simulated data: Diffusion-limited aggregation Tree
    • Pancreas
    • Neurogenesis

API Reference

  • API
    • tools: tl
    • external: ext
    • plotting: pl

datasets

  • Datasets
    • Fibroblast to neuron
    • Kidney
    • Simulated data: Diffusion-limited aggregation Tree
    • Pancreas
    • Neurogenesis

downstream

  • Regulators
    • Branch regulator detection
    • Main branches regulator detection
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