phlower
Getting started
About PHLOWER
Installation
Tutorial
API Reference
API
tools:
tl
difusion map
hodge laplacian decomposition to infer trajectory
clustering
dimensionality reduction
phlower.tl.run_pca
phlower.tl.run_umap
phlower.tl.run_mds
phlower.tl.run_kernelpca
phlower.tl.run_lda
phlower.tl.run_isomap
phlower.tl.run_fdl
phlower.tl.run_palantir_fdl
phlower.tl.run_tsne
tree analysis
adata
external:
ext
plotting:
pl
datasets
Datasets
downstream
Regulators
phlower
API
phlower.tl.run_isomap
View page source
phlower.tl.run_isomap
phlower.tl.
run_isomap
(
mtx
,
n_components
=
2
,
n_neighbors
=
5
,
*
args
,
**
kwargs
)