phlower.tl.run_fdl

phlower.tl.run_fdl(mtx, affinity_k=7, random_state=2022, outboundAttractionDistribution=False, linLogMode=False, adjustSizes=False, edgeWeightInfluence=1.0, jitterTolerance=1.0, barnesHutOptimize=True, barnesHutTheta=1.2, multiThreaded=False, scalingRatio=4.0, strongGravityMode=True, gravity=2.0, device='cpu', verbose=True, *args, **kwargs)

adjusted from: https://github.com/dpeerlab/Harmony/blob/master/src/harmony/plot.py ForceAtlas2 input dm to calculate affinity matrix