phlower.tl.TF_gene_correlation

phlower.tl.TF_gene_correlation(adata: AnnData, tfadata: AnnData, name: str = 'markers_3_97_vs_0_11_rest_0.3withParents')

calculate the correlation between TF and genes for a comparison of markers This is only calculate the correlation without caring about the order of cells

Parameters

adata: AnnData

AnnData object with gene expression

tfadata: AnnData

AnnData object with TF binding data

name: str

the name of the differentiation branches