phlower.tl.trajs_clustering
- phlower.tl.trajs_clustering(adata, embedding='trajs_harmonic_dm', clustering_method: str = 'dbscan', iscopy=False, oname_basis='', **args)
- adata: AnnData
AnnData object
- embedding: str
the embedding for visualize the clustering results, “trajs_harmonic_dm” by default
- clustering_method: str
the clustering method to use, options dbscan,leiden,louvain, “dbscan” by default
- iscopy: bool
whether to return a copy of adata or not, False by default
- oname_basis: str
the basis of the output name, “” by default
- args: dict
the parameters for the clustering method