phlower.tl.magic_adata
- phlower.tl.magic_adata(adata: AnnData, random_state=2022, iscopy=False, verbose=True, **kwargs)
Run MAGIC on AnnData object
Parameters
- adata: AnnData
AnnData object
- random_state: int
seeds for random number generator
- iscopy: bool
return a copy of adata if True
- verbose: bool
print progress if True
- kwargs: dict
additional parameters for MAGIC
Returns
- AnnData: AnnData
return adata with magic imputed data